iSARST

The integrated Service of Structural similarity search Aided by Ramachandran Sequential Transformation


Downloads

Here we offer stand-alone version of SARST and CPSARST, which work on any platform with Java 2 runtime environment (Java version: 1.4 or latter). The stand-alone SARST program provided here is a database search tool, so please also download the PDB and SCOP target databases. The CPSARST program in this page is a pair-wise structural alignment tool. To run it correctly, you will also need its screening and refinement engine.

SARST
1. SARST.tar.gz, SARST.zip
2. Ramachandran Sequence Database for PDB 2006 (SARSTdb_PDB2006.tar.gz, SARSTdb_PDB2006.zip)
3. Ramachandran Sequence Databases for ASTRAL SCOP 1.69 (SARSTdb_SCOP169s.tar.gz, SARSTdb_SCOP169s.zip)

CPSARST
1. CPSARST.tar.gz, CPSARST.zip
2. Screening engine, bl2seq: https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download
3. Refinement engine, fast: http://biowulf.bu.edu/FAST/download.htm